3D structure

PDB id
8FZF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGUCAG*CGCAACC*GAUGACG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FZF_015 not in the Motif Atlas
Homologous match to J3_4LFB_007
Geometric discrepancy: 0.1211
The information below is about J3_4LFB_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_08394.3
Basepair signature
cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8FZF|1|a|C|1063
8FZF|1|a|G|1064
8FZF|1|a|U|1065
8FZF|1|a|C|1066
8FZF|1|a|A|1067
8FZF|1|a|G|1068
*
8FZF|1|a|C|1107
8FZF|1|a|G|1108
8FZF|1|a|C|1109
8FZF|1|a|A|1110
8FZF|1|a|A|1111
8FZF|1|a|C|1112
8FZF|1|a|C|1113
*
8FZF|1|a|G|1187
8FZF|1|a|A|1188
8FZF|1|a|U|1189
8FZF|1|a|G|1190
8FZF|1|a|A|1191
8FZF|1|a|C|1192
8FZF|1|a|G|1193

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain e
30S ribosomal protein S5
Chain i
Small ribosomal subunit protein uS9
Chain j
30S ribosomal protein S10
Chain n
Small ribosomal subunit protein uS14

Coloring options:


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