J3_8FZF_015
3D structure
- PDB id
- 8FZF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FZF_015 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1211
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8FZF|1|a|C|1063
8FZF|1|a|G|1064
8FZF|1|a|U|1065
8FZF|1|a|C|1066
8FZF|1|a|A|1067
8FZF|1|a|G|1068
*
8FZF|1|a|C|1107
8FZF|1|a|G|1108
8FZF|1|a|C|1109
8FZF|1|a|A|1110
8FZF|1|a|A|1111
8FZF|1|a|C|1112
8FZF|1|a|C|1113
*
8FZF|1|a|G|1187
8FZF|1|a|A|1188
8FZF|1|a|U|1189
8FZF|1|a|G|1190
8FZF|1|a|A|1191
8FZF|1|a|C|1192
8FZF|1|a|G|1193
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S5
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- 30S ribosomal protein S10
- Chain n
- Small ribosomal subunit protein uS14
Coloring options: