J3_8FZF_019

3D structure

PDB id

8FZF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8FZF|1|A|U|34, 8FZF|1|A|U|448, 8FZF|1|A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZF_019 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0818

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8FZF|1|A|C|32
8FZF|1|A|C|33
8FZF|1|A|U|34
8FZF|1|A|G|35
*
8FZF|1|A|C|445
8FZF|1|A|G|446
8FZF|1|A|A|447
8FZF|1|A|U|448
8FZF|1|A|A|449
8FZF|1|A|G|450
8FZF|1|A|U|451
8FZF|1|A|G|452
8FZF|1|A|A|453
8FZF|1|A|A|454
8FZF|1|A|C|455
8FZF|1|A|C|456
8FZF|1|A|A|457
8FZF|1|A|G|458
8FZF|1|A|U|459
8FZF|1|A|A|460
8FZF|1|A|C|461
*
8FZF|1|A|G|468
8FZF|1|A|G|469
8FZF|1|A|A|470
8FZF|1|A|A|471
8FZF|1|A|A|472
8FZF|1|A|G|473

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L20

Chain V

50S ribosomal protein L23