J3_8FZG_003

3D structure

PDB id

8FZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZG_003 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1782

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

8FZG|1|A|G|1055
8FZG|1|A|G|1056
8FZG|1|A|A|1057
*
8FZG|1|A|U|1081
8FZG|1|A|U|1082
8FZG|1|A|U|1083
8FZG|1|A|A|1084
8FZG|1|A|A|1085
8FZG|1|A|A|1086
8FZG|1|A|G|1087
*
8FZG|1|A|C|1102
8FZG|1|A|A|1103
8FZG|1|A|C|1104

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11