3D structure

PDB id
8FZG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GC*GGAAUAU*AGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8FZG_029 not in the Motif Atlas
Geometric match to J3_4LFB_010
Geometric discrepancy: 0.1096
The information below is about J3_4LFB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.4
Basepair signature
cWW-cWW-cSW-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8FZG|1|a|G|46
8FZG|1|a|C|47
*
8FZG|1|a|G|361
8FZG|1|a|G|362
8FZG|1|a|A|363
8FZG|1|a|A|364
8FZG|1|a|U|365
8FZG|1|a|A|366
8FZG|1|a|U|367
*
8FZG|1|a|A|393
8FZG|1|a|G|394
8FZG|1|a|C|395

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain l
30S ribosomal protein S12
Chain p
30S ribosomal protein S16
Chain v
Peptide chain release factor RF3

Coloring options:


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