J3_8FZH_006

3D structure

PDB id

8FZH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZH_006 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0652

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8FZH|1|A|C|2091
8FZH|1|A|U|2092
8FZH|1|A|G|2093
*
8FZH|1|A|C|2196
8FZH|1|A|U|2197
8FZH|1|A|A|2198
8FZH|1|A|A|2199
8FZH|1|A|C|2200
*
8FZH|1|A|G|2223
8FZH|1|A|G|2224
8FZH|1|A|A|2225
8FZH|1|A|C|2226
8FZH|1|A|A|2227
8FZH|1|A|G|2228

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain Z

50S ribosomal protein L28