J3_8FZH_014
3D structure
- PDB id
- 8FZH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8FZH|1|a|A|975, 8FZH|1|a|G|976, 8FZH|1|a|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FZH_014 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0875
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8FZH|1|a|U|955
8FZH|1|a|U|956
8FZH|1|a|U|957
8FZH|1|a|A|958
8FZH|1|a|A|959
8FZH|1|a|U|960
8FZH|1|a|U|961
8FZH|1|a|C|962
*
8FZH|1|a|G|973
8FZH|1|a|A|974
8FZH|1|a|A|975
8FZH|1|a|G|976
8FZH|1|a|A|977
8FZH|1|a|A|978
8FZH|1|a|C|979
8FZH|1|a|C|980
8FZH|1|a|U|981
8FZH|1|a|U|982
8FZH|1|a|A|983
8FZH|1|a|C|984
*
8FZH|1|a|G|1221
8FZH|1|a|G|1222
8FZH|1|a|C|1223
8FZH|1|a|U|1224
8FZH|1|a|A|1225
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
- Chain w
- Peptide chain release factor 1
Coloring options: