J3_8FZH_020

3D structure

PDB id

8FZH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZH_020 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0906

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8FZH|1|A|G|30
8FZH|1|A|C|31
*
8FZH|1|A|G|474
8FZH|1|A|C|475
8FZH|1|A|G|476
8FZH|1|A|A|477
8FZH|1|A|A|478
8FZH|1|A|A|479
8FZH|1|A|A|480
8FZH|1|A|G|481
*
8FZH|1|A|C|509
8FZH|1|A|C|510

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L20

Chain W

50S ribosomal protein L24