J3_8FZI_006

3D structure

PDB id

8FZI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZI_006 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.073

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8FZI|1|A|C|2091
8FZI|1|A|U|2092
8FZI|1|A|G|2093
*
8FZI|1|A|C|2196
8FZI|1|A|U|2197
8FZI|1|A|A|2198
8FZI|1|A|A|2199
8FZI|1|A|C|2200
*
8FZI|1|A|G|2223
8FZI|1|A|G|2224
8FZI|1|A|A|2225
8FZI|1|A|C|2226
8FZI|1|A|A|2227
8FZI|1|A|G|2228

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain Z

50S ribosomal protein L28