J3_8FZJ_014
3D structure
- PDB id
- 8FZJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8FZJ|1|a|A|975, 8FZJ|1|a|G|976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8FZJ_014 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1578
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8FZJ|1|a|U|955
8FZJ|1|a|U|956
8FZJ|1|a|U|957
8FZJ|1|a|A|958
8FZJ|1|a|A|959
8FZJ|1|a|U|960
8FZJ|1|a|U|961
8FZJ|1|a|C|962
*
8FZJ|1|a|G|973
8FZJ|1|a|A|974
8FZJ|1|a|A|975
8FZJ|1|a|G|976
8FZJ|1|a|A|977
8FZJ|1|a|A|978
8FZJ|1|a|C|979
8FZJ|1|a|C|980
8FZJ|1|a|U|981
8FZJ|1|a|U|982
8FZJ|1|a|A|983
8FZJ|1|a|C|984
*
8FZJ|1|a|G|1221
8FZJ|1|a|G|1222
8FZJ|1|a|C|1223
8FZJ|1|a|U|1224
8FZJ|1|a|A|1225
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
Coloring options: