J3_8FZJ_015

3D structure

PDB id

8FZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8FZJ_015 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1673

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8FZJ|1|a|C|990
8FZJ|1|a|U|991
8FZJ|1|a|U|992
8FZJ|1|a|G|993
*
8FZJ|1|a|C|1045
8FZJ|1|a|A|1046
8FZJ|1|a|G|1047
*
8FZJ|1|a|C|1210
8FZJ|1|a|U|1211
8FZJ|1|a|U|1212
8FZJ|1|a|A|1213
8FZJ|1|a|C|1214
8FZJ|1|a|G|1215

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14