J3_8G2B_004

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

8G2B|1|1A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2B_004 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0503

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8G2B|1|1A|C|1298
8G2B|1|1A|G|1299
8G2B|1|1A|U|1300
8G2B|1|1A|A|1301
8G2B|1|1A|A|1302
8G2B|1|1A|G|1303
*
8G2B|1|1A|C|1625
8G2B|1|1A|G|1626
8G2B|1|1A|G|1627
*
8G2B|1|1A|U|1639
8G2B|1|1A|C|1640
8G2B|1|1A|A|1641
8G2B|1|1A|G|1642

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains