J3_8G2B_024

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2B_024 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0467

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8G2B|1|2A|U|2091
8G2B|1|2A|U|2092
8G2B|1|2A|G|2093
*
8G2B|1|2A|C|2196
8G2B|1|2A|U|2197
8G2B|1|2A|A|2198
8G2B|1|2A|A|2199
8G2B|1|2A|C|2200
*
8G2B|1|2A|G|2223
8G2B|1|2A|G|2224
8G2B|1|2A|A|2225
8G2B|1|2A|C|2226
8G2B|1|2A|A|2227
8G2B|1|2A|G|2228

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2D

50S ribosomal protein L2

Chain 2I

50S ribosomal protein L9