J3_8G2B_044

3D structure

PDB id

8G2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2B_044 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0594

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8G2B|1|1A|G|1424
8G2B|1|1A|G|1425
8G2B|1|1A|G|1426
8G2B|1|1A|A|1427
8G2B|1|1A|C|1428
8G2B|1|1A|G|1429
*
8G2B|1|1A|C|1564
8G2B|1|1A|C|1565
*
8G2B|1|1A|G|1568
8G2B|1|1A|A|1569
8G2B|1|1A|A|1570
8G2B|1|1A|A|1571
8G2B|1|1A|A|1572
8G2B|1|1A|G|1573
8G2B|1|1A|C|1574

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2