J3_8G2B_049
3D structure
- PDB id
- 8G2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAphe, and aminoacylated P-site fMet-tRNAmet at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 8G2B|1|1a|C|48, 8G2B|1|1a|A|50, 8G2B|1|1a|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G2B_049 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0573
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8G2B|1|1a|G|46
8G2B|1|1a|C|47
8G2B|1|1a|C|48
8G2B|1|1a|U|49
8G2B|1|1a|A|50
8G2B|1|1a|A|51
8G2B|1|1a|G|52
*
8G2B|1|1a|U|359
8G2B|1|1a|A|360
8G2B|1|1a|G|361
8G2B|1|1a|G|362
8G2B|1|1a|A|363
8G2B|1|1a|A|364
8G2B|1|1a|U|365
8G2B|1|1a|C|366
8G2B|1|1a|U|367
*
8G2B|1|1a|A|393
8G2B|1|1a|G|394
8G2B|1|1a|C|395
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1l
- 30S ribosomal protein S12
- Chain 1p
- 30S ribosomal protein S16
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