J3_8G2C_036

3D structure

PDB id

8G2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

8G2C|1|1A|U|504, 8G2C|1|1A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2C_036 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0426

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

8G2C|1|1A|G|30
8G2C|1|1A|C|31
*
8G2C|1|1A|G|474
8G2C|1|1A|U|475
8G2C|1|1A|G|476
8G2C|1|1A|A|477
8G2C|1|1A|A|478
8G2C|1|1A|A|479
8G2C|1|1A|A|480
8G2C|1|1A|G|481
8G2C|1|1A|A|482
8G2C|1|1A|A|483
8G2C|1|1A|C|484
*
8G2C|1|1A|G|496
8G2C|1|1A|A|497
8G2C|1|1A|G|498
8G2C|1|1A|U|499
8G2C|1|1A|G|500
8G2C|1|1A|A|501
8G2C|1|1A|A|502
8G2C|1|1A|A|503
8G2C|1|1A|U|504
8G2C|1|1A|A|505
8G2C|1|1A|G|506
8G2C|1|1A|A|507
8G2C|1|1A|G|508
8G2C|1|1A|C|509
8G2C|1|1A|C|510

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22

Chain 1Y

50S ribosomal protein L24