J3_8G2C_073

3D structure

PDB id

8G2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

8G2C|1|2a|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2C_073 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.1323

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_40706.1

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8G2C|1|2a|C|1116
8G2C|1|2a|G|1117
8G2C|1|2a|C|1118
*
8G2C|1|2a|G|1155
8G2C|1|2a|G|1156
8G2C|1|2a|A|1157
8G2C|1|2a|C|1158
8G2C|1|2a|U|1159
8G2C|1|2a|G|1160
8G2C|1|2a|C|1161
*
8G2C|1|2a|G|1175
8G2C|1|2a|A|1176
8G2C|1|2a|G|1177
8G2C|1|2a|G|1178
8G2C|1|2a|A|1179
8G2C|1|2a|A|1180
8G2C|1|2a|G|1181
8G2C|1|2a|G|1182
8G2C|1|2a|A|1183
8G2C|1|2a|G|1184

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2i

30S ribosomal protein S9

Chain 2n

30S ribosomal protein S14 type Z