J3_8G2D_040

3D structure

PDB id

8G2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

8G2D|1|1A|G|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2D_040 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0563

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8G2D|1|1A|C|297
8G2D|1|1A|G|298
8G2D|1|1A|A|299
8G2D|1|1A|A|300
8G2D|1|1A|G|301
*
8G2D|1|1A|C|316
8G2D|1|1A|G|317
8G2D|1|1A|C|318
8G2D|1|1A|C|319
8G2D|1|1A|A|320
8G2D|1|1A|G|321
8G2D|1|1A|A|322
8G2D|1|1A|G|323
8G2D|1|1A|A|324
8G2D|1|1A|G|325
*
8G2D|1|1A|C|337
8G2D|1|1A|G|338
8G2D|1|1A|U|339
8G2D|1|1A|A|340
8G2D|1|1A|G|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24