3D structure

PDB id
8G2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GGA*UUUAAAG*CAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G2D_074 not in the Motif Atlas
Homologous match to J3_5J7L_040
Geometric discrepancy: 0.1999
The information below is about J3_5J7L_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28621.5
Basepair signature
cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
Number of instances in this motif group
7

Unit IDs

8G2D|1|1A|G|1055
8G2D|1|1A|G|1056
8G2D|1|1A|A|1057
*
8G2D|1|1A|U|1081
8G2D|1|1A|U|1082
8G2D|1|1A|U|1083
8G2D|1|1A|A|1084
8G2D|1|1A|A|1085
8G2D|1|1A|A|1086
8G2D|1|1A|G|1087
*
8G2D|1|1A|C|1102
8G2D|1|1A|A|1103
8G2D|1|1A|C|1104

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L36

Coloring options:


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