J3_8G2D_074
3D structure
- PDB id
- 8G2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with tylosin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.70A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GGA*UUUAAAG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G2D_074 not in the Motif Atlas
- Homologous match to J3_5J7L_040
- Geometric discrepancy: 0.1999
- The information below is about J3_5J7L_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.5
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8G2D|1|1A|G|1055
8G2D|1|1A|G|1056
8G2D|1|1A|A|1057
*
8G2D|1|1A|U|1081
8G2D|1|1A|U|1082
8G2D|1|1A|U|1083
8G2D|1|1A|A|1084
8G2D|1|1A|A|1085
8G2D|1|1A|A|1086
8G2D|1|1A|G|1087
*
8G2D|1|1A|C|1102
8G2D|1|1A|A|1103
8G2D|1|1A|C|1104
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 19
- 50S ribosomal protein L36
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