J3_8G2U_009

3D structure

PDB id

8G2U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:control-apo-70S at 900ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8G2U|1|B|A|2518, 8G2U|1|B|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G2U_009 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0738

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8G2U|1|B|C|2517
8G2U|1|B|A|2518
8G2U|1|B|U|2519
8G2U|1|B|C|2520
*
8G2U|1|B|G|2545
8G2U|1|B|U|2546
8G2U|1|B|A|2547
*
8G2U|1|B|U|2561
8G2U|1|B|U|2562
8G2U|1|B|U|2563
8G2U|1|B|A|2564
8G2U|1|B|A|2565
8G2U|1|B|A|2566
8G2U|1|B|G|2567

Current chains

Chain B

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L14