3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UAU*AGAC*GGUG
Length
11 nucleotides
Bulged bases
8G31|1|v|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G31_015 not in the Motif Atlas
Homologous match to J3_5J7L_010
Geometric discrepancy: 0.1905
The information below is about J3_5J7L_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82365.4
Basepair signature
cWW-F-cWW-cWW-F-F
Number of instances in this motif group
4

Unit IDs

8G31|1|v|U|1116
8G31|1|v|A|1117
8G31|1|v|U|1118
*
8G31|1|v|A|1155
8G31|1|v|G|1156
8G31|1|v|A|1157
8G31|1|v|C|1158
*
8G31|1|v|G|1181
8G31|1|v|G|1182
8G31|1|v|U|1183
8G31|1|v|G|1184

Current chains

Chain v
16S

Nearby chains

Chain f
30S ribosomal protein S7
Chain h
30S ribosomal protein S9
Chain i
30S ribosomal protein S10
Chain m
30S ribosomal protein S14
Chain w
30S ribosomal protein S2

Coloring options:


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