J3_8G31_020

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8G31|1|B|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G31_020 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0798

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8G31|1|B|G|297
8G31|1|B|G|298
8G31|1|B|A|299
8G31|1|B|A|300
8G31|1|B|G|301
*
8G31|1|B|C|316
8G31|1|B|G|317
8G31|1|B|C|318
8G31|1|B|G|319
8G31|1|B|A|320
8G31|1|B|U|321
8G31|1|B|A|322
8G31|1|B|C|323
8G31|1|B|A|324
8G31|1|B|G|325
*
8G31|1|B|C|337
8G31|1|B|G|338
8G31|1|B|U|339
8G31|1|B|A|340
8G31|1|B|C|341

Current chains

Chain B

23S

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24