3D structure

PDB id
8G31 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UG*UGUUG*CGCAA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G31_034 not in the Motif Atlas
Homologous match to J3_6CZR_024
Geometric discrepancy: 0.2214
The information below is about J3_6CZR_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_04260.1
Basepair signature
cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8G31|1|v|U|1073
8G31|1|v|G|1074
*
8G31|1|v|U|1083
8G31|1|v|G|1084
8G31|1|v|U|1085
8G31|1|v|U|1086
8G31|1|v|G|1087
*
8G31|1|v|C|1098
8G31|1|v|G|1099
8G31|1|v|C|1100
8G31|1|v|A|1101
8G31|1|v|A|1102

Current chains

Chain v
16S

Nearby chains

Chain d
30S ribosomal protein S5
Chain w
30S ribosomal protein S2

Coloring options:


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