J3_8G31_034

3D structure

PDB id

8G31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:2nd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G31_034 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.2214

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8G31|1|v|U|1073
8G31|1|v|G|1074
*
8G31|1|v|U|1083
8G31|1|v|G|1084
8G31|1|v|U|1085
8G31|1|v|U|1086
8G31|1|v|G|1087
*
8G31|1|v|C|1098
8G31|1|v|G|1099
8G31|1|v|C|1100
8G31|1|v|A|1101
8G31|1|v|A|1102

Current chains

Chain v

16S

Nearby chains

Chain d

30S ribosomal protein S5

Chain w

30S ribosomal protein S2