J3_8G34_006

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8G34|1|B|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G34_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.3235

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8G34|1|B|C|1306
8G34|1|B|A|1307
8G34|1|B|A|1308
8G34|1|B|G|1309
*
8G34|1|B|C|1605
8G34|1|B|C|1606
8G34|1|B|C|1607
8G34|1|B|A|1608
8G34|1|B|A|1609
8G34|1|B|A|1610
8G34|1|B|C|1611
*
8G34|1|B|G|1620
8G34|1|B|U|1621
8G34|1|B|G|1622

Current chains

Chain B

23S

Nearby chains

Chain 2

50S ribosomal protein L34