J3_8G34_007

3D structure

PDB id

8G34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:1st intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G34_007 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0696

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8G34|1|B|C|2091
8G34|1|B|U|2092
8G34|1|B|G|2093
*
8G34|1|B|C|2196
8G34|1|B|U|2197
8G34|1|B|A|2198
8G34|1|B|A|2199
8G34|1|B|C|2200
*
8G34|1|B|G|2223
8G34|1|B|G|2224
8G34|1|B|A|2225
8G34|1|B|C|2226
8G34|1|B|A|2227
8G34|1|B|G|2228

Current chains

Chain B

23S

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28