J3_8G38_006

3D structure

PDB id

8G38 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8G38|1|B|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G38_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.2168

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8G38|1|B|C|1306
8G38|1|B|A|1307
8G38|1|B|A|1308
8G38|1|B|G|1309
*
8G38|1|B|C|1605
8G38|1|B|C|1606
8G38|1|B|C|1607
8G38|1|B|A|1608
8G38|1|B|A|1609
8G38|1|B|A|1610
8G38|1|B|C|1611
*
8G38|1|B|G|1620
8G38|1|B|U|1621
8G38|1|B|G|1622

Current chains

Chain B

23S

Nearby chains

Chain 2

50S ribosomal protein L34