3D structure

PDB id
8G38 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Time-resolved cryo-EM study of the 70S recycling by the HflX:3rd Intermediate
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G38_007 not in the Motif Atlas
Homologous match to J3_5J7L_044
Geometric discrepancy: 0.081
The information below is about J3_5J7L_044
Detailed Annotation
Kink-turn in J3
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

8G38|1|B|C|2091
8G38|1|B|U|2092
8G38|1|B|G|2093
*
8G38|1|B|C|2196
8G38|1|B|U|2197
8G38|1|B|A|2198
8G38|1|B|A|2199
8G38|1|B|C|2200
*
8G38|1|B|G|2223
8G38|1|B|G|2224
8G38|1|B|A|2225
8G38|1|B|C|2226
8G38|1|B|A|2227
8G38|1|B|G|2228

Current chains

Chain B
23S

Nearby chains

Chain C
50S ribosomal protein L2
Chain X
50S ribosomal protein L28

Coloring options:


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