J3_8G4S_008
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- UCCCAG*CGAGAC*GCGAUA
- Length
- 18 nucleotides
- Bulged bases
- 8G4S|1|2|C|1024
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G4S_008 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1975
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8G4S|1|2|U|1022
8G4S|1|2|C|1023
8G4S|1|2|C|1024
8G4S|1|2|C|1025
8G4S|1|2|A|1026
8G4S|1|2|G|1027
*
8G4S|1|2|C|1066
8G4S|1|2|G|1067
8G4S|1|2|A|1068
8G4S|1|2|G|1069
8G4S|1|2|A|1070
8G4S|1|2|C|1071
*
8G4S|1|2|G|1122
8G4S|1|2|C|1123
8G4S|1|2|G|1124
8G4S|1|2|A|1125
8G4S|1|2|U|1126
8G4S|1|2|A|1127
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain C
- Ribosomal protein S2
- Chain D
- Ribosomal protein S3
- Chain Q
- Ribosomal protein S16
- Chain R
- Ribosomal protein S17
- Chain U
- Ribosomal protein S20
- Chain d
- Ribosomal protein S29A
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