J3_8G4S_012

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

UG*CGUC*GACAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G4S_012 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.3017

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8G4S|1|2|U|1032
8G4S|1|2|G|1033
*
8G4S|1|2|C|1042
8G4S|1|2|G|1043
8G4S|1|2|U|1044
8G4S|1|2|C|1045
*
8G4S|1|2|G|1057
8G4S|1|2|A|1058
8G4S|1|2|C|1059
8G4S|1|2|A|1060
8G4S|1|2|A|1061

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

40S ribosomal protein SA

Chain C

Ribosomal protein S2

Chain R

Ribosomal protein S17