J3_8G4S_013
3D structure
- PDB id
- 8G4S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.14 Å
Loop
- Sequence
- CGGC*GGACGGC*GAGGACGGCG
- Length
- 21 nucleotides
- Bulged bases
- 8G4S|1|2|C|1118
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G4S_013 not in the Motif Atlas
- Geometric match to J3_4LFB_018
- Geometric discrepancy: 0.3929
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8G4S|1|2|C|1074
8G4S|1|2|G|1075
8G4S|1|2|G|1076
8G4S|1|2|C|1077
*
8G4S|1|2|G|1091
8G4S|1|2|G|1092
8G4S|1|2|A|1093
8G4S|1|2|C|1094
8G4S|1|2|G|1095
8G4S|1|2|G|1096
8G4S|1|2|C|1097
*
8G4S|1|2|G|1110
8G4S|1|2|A|1111
8G4S|1|2|G|1112
8G4S|1|2|G|1113
8G4S|1|2|A|1114
8G4S|1|2|C|1115
8G4S|1|2|G|1116
8G4S|1|2|G|1117
8G4S|1|2|C|1118
8G4S|1|2|G|1119
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- SSU ribosomal protein S7P (Fragment)
- Chain Q
- Ribosomal protein S16
- Chain R
- Ribosomal protein S17
- Chain U
- Ribosomal protein S20
- Chain c
- Ribosomal protein S28
- Chain d
- Ribosomal protein S29A
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