J3_8G5Z_033
3D structure
- PDB id
- 8G5Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 8G5Z|1|L5|C|2470, 8G5Z|1|L5|A|2472, 8G5Z|1|L5|G|2475, 8G5Z|1|L5|C|2504
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G5Z_033 not in the Motif Atlas
- Homologous match to J3_8C3A_053
- Geometric discrepancy: 0.5841
- The information below is about J3_8C3A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34234.1
- Basepair signature
- cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8G5Z|1|L5|A|2451
8G5Z|1|L5|G|2452
8G5Z|1|L5|A|2453
8G5Z|1|L5|U|2454
8G5Z|1|L5|G|2455
8G5Z|1|L5|G|2456
*
8G5Z|1|L5|C|2465
8G5Z|1|L5|G|2466
8G5Z|1|L5|U|2467
8G5Z|1|L5|U|2468
8G5Z|1|L5|C|2469
8G5Z|1|L5|C|2470
8G5Z|1|L5|G|2471
8G5Z|1|L5|A|2472
8G5Z|1|L5|A|2473
8G5Z|1|L5|G|2474
8G5Z|1|L5|G|2475
8G5Z|1|L5|G|2476
*
8G5Z|1|L5|C|2501
8G5Z|1|L5|G|2502
8G5Z|1|L5|G|2503
8G5Z|1|L5|C|2504
8G5Z|1|L5|C|2505||A
8G5Z|1|L5|G|2506
8G5Z|1|L5|A|2507
8G5Z|1|L5|PSU|2508
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- uL2
- Chain LG
- 60S ribosomal protein L7a
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- uL23
- Chain Lj
- 60S ribosomal protein L37
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