J3_8G5Z_044
3D structure
- PDB id
- 8G5Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- U(OMG)G*(PSU)AAGA*UA
- Length
- 10 nucleotides
- Bulged bases
- 8G5Z|1|S2|G|921
- QA status
- Modified nucleotides: OMG, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G5Z_044 not in the Motif Atlas
- Geometric match to J3_4V88_080
- Geometric discrepancy: 0.3011
- The information below is about J3_4V88_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.3
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8G5Z|1|S2|U|682
8G5Z|1|S2|OMG|683
8G5Z|1|S2|G|684
*
8G5Z|1|S2|PSU|918
8G5Z|1|S2|A|919
8G5Z|1|S2|A|920
8G5Z|1|S2|G|921
8G5Z|1|S2|A|922
*
8G5Z|1|S2|U|1022
8G5Z|1|S2|A|1023
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- uS17
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- uS12
- Chain Sb
- eS27
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