3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CGAUAGUCAACAAGUAC*GGAAAG*CUCG
Length
27 nucleotides
Bulged bases
8G60|1|L5|U|354, 8G60|1|L5|A|362, 8G60|1|L8|C|23
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G60_026 not in the Motif Atlas
Homologous match to J3_8P9A_045
Geometric discrepancy: 0.0455
The information below is about J3_8P9A_045
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_07616.1
Basepair signature
cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
Number of instances in this motif group
10

Unit IDs

8G60|1|L5|C|351
8G60|1|L5|G|352
8G60|1|L5|A|353
8G60|1|L5|U|354
8G60|1|L5|A|355
8G60|1|L5|G|356
8G60|1|L5|U|357
8G60|1|L5|C|358
8G60|1|L5|A|359
8G60|1|L5|A|360
8G60|1|L5|C|361
8G60|1|L5|A|362
8G60|1|L5|A|363
8G60|1|L5|G|364
8G60|1|L5|U|365
8G60|1|L5|A|366
8G60|1|L5|C|367
*
8G60|1|L5|G|374
8G60|1|L5|G|375
8G60|1|L5|A|376
8G60|1|L5|A|377
8G60|1|L5|A|378
8G60|1|L5|G|379
*
8G60|1|L8|C|21
8G60|1|L8|U|22
8G60|1|L8|C|23
8G60|1|L8|G|24

Current chains

Chain L5
28S rRNA
Chain L8
5.8S rRNA

Nearby chains

Chain LC
uL4
Chain LY
uL24
Chain Lj
eL37
Chain Ll
eL39

Coloring options:


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