J3_8G60_037

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

(OMG)UC*GCCUCACGAUCC*(OMG)GUGUC

Length

21 nucleotides

Bulged bases

8G60|1|L5|C|4337, 8G60|1|L5|U|4374

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G60_037 not in the Motif Atlas

Homologous match to J3_8C3A_056

Geometric discrepancy: 0.0693

The information below is about J3_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_27903.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F

Number of instances in this motif group

5

Unit IDs

8G60|1|L5|OMG|4228
8G60|1|L5|U|4229
8G60|1|L5|C|4230
*
8G60|1|L5|G|4331
8G60|1|L5|C|4332
8G60|1|L5|C|4333
8G60|1|L5|U|4334
8G60|1|L5|C|4335
8G60|1|L5|A|4336
8G60|1|L5|C|4337
8G60|1|L5|G|4338
8G60|1|L5|A|4339
8G60|1|L5|U|4340
8G60|1|L5|C|4341
8G60|1|L5|C|4342
*
8G60|1|L5|OMG|4370
8G60|1|L5|G|4371
8G60|1|L5|U|4372
8G60|1|L5|G|4373
8G60|1|L5|U|4374
8G60|1|L5|C|4375

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

eL18

Chain LT

eL21

Chain La

uL15

Chain Lo

eL42