J3_8G60_043

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

AG*CGC(A2M)AAU*(A2M)GU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G60_043 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0667

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8G60|1|S2|A|40
8G60|1|S2|G|41
*
8G60|1|S2|C|481
8G60|1|S2|G|482
8G60|1|S2|C|483
8G60|1|S2|A2M|484
8G60|1|S2|A|485
8G60|1|S2|A|486
8G60|1|S2|U|487
*
8G60|1|S2|A2M|512
8G60|1|S2|G|513
8G60|1|S2|U|514

Current chains

Chain S2

18S rRNA

Nearby chains

Chain EF

eEF1A

Chain SJ

uS4

Chain SX

uS12