J3_8G6J_036
3D structure
- PDB id
- 8G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- (OMG)UC*GCCUCACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 8G6J|1|L5|C|4337, 8G6J|1|L5|U|4374
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8G6J_036 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0665
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8G6J|1|L5|OMG|4228
8G6J|1|L5|U|4229
8G6J|1|L5|C|4230
*
8G6J|1|L5|G|4331
8G6J|1|L5|C|4332
8G6J|1|L5|C|4333
8G6J|1|L5|U|4334
8G6J|1|L5|C|4335
8G6J|1|L5|A|4336
8G6J|1|L5|C|4337
8G6J|1|L5|G|4338
8G6J|1|L5|A|4339
8G6J|1|L5|U|4340
8G6J|1|L5|C|4341
8G6J|1|L5|C|4342
*
8G6J|1|L5|OMG|4370
8G6J|1|L5|G|4371
8G6J|1|L5|U|4372
8G6J|1|L5|G|4373
8G6J|1|L5|U|4374
8G6J|1|L5|C|4375
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27a
- Chain Lo
- 60S ribosomal protein L36a
Coloring options: