3D structure

PDB id
8G6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.31 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
8G6X|1|a|U|34, 8G6X|1|a|U|448, 8G6X|1|a|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8G6X_015 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0403
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

8G6X|1|a|C|32
8G6X|1|a|C|33
8G6X|1|a|U|34
8G6X|1|a|G|35
*
8G6X|1|a|C|445
8G6X|1|a|G|446
8G6X|1|a|A|447
8G6X|1|a|U|448
8G6X|1|a|A|449
8G6X|1|a|G|450
8G6X|1|a|U|451
8G6X|1|a|G|452
8G6X|1|a|A|453
8G6X|1|a|A|454
8G6X|1|a|C|455
8G6X|1|a|C|456
8G6X|1|a|A|457
8G6X|1|a|G|458
8G6X|1|a|U|459
8G6X|1|a|A|460
8G6X|1|a|C|461
*
8G6X|1|a|G|468
8G6X|1|a|G|469
8G6X|1|a|A|470
8G6X|1|a|A|471
8G6X|1|a|A|472
8G6X|1|a|G|473

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain e
50S ribosomal protein L4
Chain p
50S ribosomal protein L20
Chain s
50S ribosomal protein L23

Coloring options:


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