J3_8G7Q_006

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G7Q_006 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0926

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8G7Q|1|A|C|2091
8G7Q|1|A|U|2092
8G7Q|1|A|G|2093
*
8G7Q|1|A|C|2196
8G7Q|1|A|U|2197
8G7Q|1|A|A|2198
8G7Q|1|A|A|2199
8G7Q|1|A|C|2200
*
8G7Q|1|A|G|2223
8G7Q|1|A|G|2224
8G7Q|1|A|A|2225
8G7Q|1|A|C|2226
8G7Q|1|A|A|2227
8G7Q|1|A|G|2228

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain Z

50S ribosomal protein L28