J3_8G7S_005

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8G7S|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G7S_005 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.3506

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8G7S|1|A|C|1306
8G7S|1|A|A|1307
8G7S|1|A|A|1308
8G7S|1|A|G|1309
*
8G7S|1|A|C|1605
8G7S|1|A|C|1606
8G7S|1|A|C|1607
8G7S|1|A|A|1608
8G7S|1|A|A|1609
8G7S|1|A|A|1610
8G7S|1|A|C|1611
*
8G7S|1|A|G|1620
8G7S|1|A|U|1621
8G7S|1|A|G|1622

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34