J3_8G7S_006

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G7S_006 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0806

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8G7S|1|A|C|2091
8G7S|1|A|U|2092
8G7S|1|A|G|2093
*
8G7S|1|A|C|2196
8G7S|1|A|U|2197
8G7S|1|A|A|2198
8G7S|1|A|A|2199
8G7S|1|A|C|2200
*
8G7S|1|A|G|2223
8G7S|1|A|G|2224
8G7S|1|A|A|2225
8G7S|1|A|C|2226
8G7S|1|A|A|2227
8G7S|1|A|G|2228

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain Z

50S ribosomal protein L28