J3_8G7S_019

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8G7S_019 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0883

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8G7S|1|A|G|30
8G7S|1|A|C|31
*
8G7S|1|A|G|474
8G7S|1|A|C|475
8G7S|1|A|G|476
8G7S|1|A|A|477
8G7S|1|A|A|478
8G7S|1|A|A|479
8G7S|1|A|A|480
8G7S|1|A|G|481
*
8G7S|1|A|C|509
8G7S|1|A|C|510

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L20

Chain W

50S ribosomal protein L24