J3_8GLP_003

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CAG*CG(PSU)AG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8GLP_003 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.2602

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8GLP|1|L5|C|1546
8GLP|1|L5|A|1547
8GLP|1|L5|G|1548
*
8GLP|1|L5|C|1580
8GLP|1|L5|G|1581
8GLP|1|L5|PSU|1582
8GLP|1|L5|A|1583
8GLP|1|L5|G|1584
*
8GLP|1|L5|U|1609
8GLP|1|L5|C|1610
8GLP|1|L5|C|1611
8GLP|1|L5|G|1612

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8 (uL2)

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a