J3_8GLP_004

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8GLP|1|L5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8GLP_004 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0749

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8GLP|1|L5|C|2393
8GLP|1|L5|G|2394
8GLP|1|L5|A|2395
8GLP|1|L5|A|2396
8GLP|1|L5|G|2397
8GLP|1|L5|U|2398
8GLP|1|L5|G|2399
*
8GLP|1|L5|C|2805
8GLP|1|L5|A|2806
8GLP|1|L5|A|2807
*
8GLP|1|L5|U|2819
8GLP|1|L5|C|2820
8GLP|1|L5|U|2821
8GLP|1|L5|G|2822

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34