J3_8GLP_019

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

8GLP|1|S2|G|1274, 8GLP|1|S2|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_87797.2

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

3

Unit IDs

8GLP|1|S2|C|1272
8GLP|1|S2|C|1273
8GLP|1|S2|G|1274
8GLP|1|S2|G|1275
8GLP|1|S2|A|1276
8GLP|1|S2|C|1277
*
8GLP|1|S2|G|1320
8GLP|1|S2|G|1321
8GLP|1|S2|G|1322
8GLP|1|S2|U|1323
8GLP|1|S2|G|1324
*
8GLP|1|S2|U|1504
8GLP|1|S2|U|1505
8GLP|1|S2|A|1506
8GLP|1|S2|G|1507
8GLP|1|S2|A|1508
8GLP|1|S2|U|1509
8GLP|1|S2|G|1510

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin-40S ribosomal protein S27a