J3_8GLP_028

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8GLP|1|L5|G|959, 8GLP|1|L5|C|962, 8GLP|1|L5|G|965, 8GLP|1|L5|C|967, 8GLP|1|L5|C|968, 8GLP|1|L5|C|969, 8GLP|1|L5|U|971, 8GLP|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8GLP|1|L5|C|712
8GLP|1|L5|C|713
*
8GLP|1|L5|G|955
8GLP|1|L5|A|956
8GLP|1|L5|G|957
8GLP|1|L5|G|958
8GLP|1|L5|G|959
8GLP|1|L5|A|960
8GLP|1|L5|G|961
8GLP|1|L5|C|962
8GLP|1|L5|G|963
8GLP|1|L5|A|964
8GLP|1|L5|G|965
8GLP|1|L5|A|966
8GLP|1|L5|C|967
8GLP|1|L5|C|968
8GLP|1|L5|C|969
8GLP|1|L5|G|970
8GLP|1|L5|U|971
8GLP|1|L5|C|972
8GLP|1|L5|G|973
8GLP|1|L5|C|974
8GLP|1|L5|C|975
8GLP|1|L5|G|976
*
8GLP|1|L5|C|1278
8GLP|1|L5|A|1279
8GLP|1|L5|C|1280
8GLP|1|L5|G|1281
8GLP|1|L5|G|1282
8GLP|1|L5|G|1283
8GLP|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32