J3_8GLP_043

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

U(OMG)GA*U(PSU)AAGAG*CAUUA

Length

16 nucleotides

Bulged bases

8GLP|1|S2|G|921

QA status

Modified nucleotides: OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8GLP|1|S2|U|682
8GLP|1|S2|OMG|683
8GLP|1|S2|G|684
8GLP|1|S2|A|685
*
8GLP|1|S2|U|917
8GLP|1|S2|PSU|918
8GLP|1|S2|A|919
8GLP|1|S2|A|920
8GLP|1|S2|G|921
8GLP|1|S2|A|922
8GLP|1|S2|G|923
*
8GLP|1|S2|C|1019
8GLP|1|S2|A|1020
8GLP|1|S2|U|1021
8GLP|1|S2|U|1022
8GLP|1|S2|A|1023

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SH

40S ribosomal protein S7

Chain SL

40S ribosomal protein S11

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S15a

Chain SX

40S ribosomal protein S23 (uS12)

Chain Sb

40S ribosomal protein S27