J3_8HFR_001
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 8HFR|1|1e|U|119, 8HFR|1|1e|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8HFR_001 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.2372
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69230.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8HFR|1|1e|C|113
8HFR|1|1e|A|114
8HFR|1|1e|A|115
8HFR|1|1e|A|116
8HFR|1|1e|U|117
8HFR|1|1e|U|118
8HFR|1|1e|U|119
8HFR|1|1e|G|120
8HFR|1|1e|A|121
8HFR|1|1e|A|122
8HFR|1|1e|A|123
*
8HFR|1|1e|U|149
8HFR|1|1e|A|150
8HFR|1|1e|A|151
8HFR|1|1e|U|152
8HFR|1|1e|U|153
8HFR|1|1e|U|154
8HFR|1|1e|G|155
8HFR|1|1e|G|156
8HFR|1|1e|A|157
8HFR|1|1e|G|158
*
8HFR|1|1e|C|263
8HFR|1|1e|G|264
8HFR|1|1e|A|265
8HFR|1|1e|A|266
8HFR|1|1e|G|267
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain Hj
- 60S ribosomal protein L8-A
- Chain LL
- 60S ribosomal protein L13-A
- Chain No
- 60S ribosomal protein L15-A
- Chain h1
- 60S ribosomal protein L35-A
- Chain ia
- 60S ribosomal protein L36-A
Coloring options: