J3_8HFR_013
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 8HFR|1|1e|G|2549, 8HFR|1|1e|U|2550, 8HFR|1|1e|U|2551, 8HFR|1|1e|A|2554, 8HFR|1|1e|U|2558, 8HFR|1|1e|U|2559, 8HFR|1|1e|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8HFR_013 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.1851
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8HFR|1|1e|A|2529
8HFR|1|1e|G|2530
8HFR|1|1e|C|2531
8HFR|1|1e|U|2532
*
8HFR|1|1e|A|2547
8HFR|1|1e|C|2548
8HFR|1|1e|G|2549
8HFR|1|1e|U|2550
8HFR|1|1e|U|2551
8HFR|1|1e|C|2552
8HFR|1|1e|U|2553
8HFR|1|1e|A|2554
8HFR|1|1e|G|2555
8HFR|1|1e|C|2556
8HFR|1|1e|A|2557
8HFR|1|1e|U|2558
8HFR|1|1e|U|2559
8HFR|1|1e|C|2560
8HFR|1|1e|A|2561
8HFR|1|1e|A|2562
8HFR|1|1e|G|2563
*
8HFR|1|1e|U|2578
8HFR|1|1e|G|2579
8HFR|1|1e|A|2580
8HFR|1|1e|U|2581
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain B4
- 60S ribosomal protein L2-A
- Chain Hj
- 60S ribosomal protein L8-A
- Chain Xc
- 60S ribosomal protein L25
- Chain Zq
- 60S ribosomal protein L27-A
- Chain cC
- 60S ribosomal protein L30
- Chain g2
- 60S ribosomal protein L34-A
- Chain nY
- 60S ribosomal protein L43-A
- Chain xI
- Shuttling pre-60S factor ECM1
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