J3_8HFR_016

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CAU*AGUG*CUG*G

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8HFR|1|1e|C|3298
8HFR|1|1e|A|3299
8HFR|1|1e|U|3300
*
8HFR|1|1e|A|3314
8HFR|1|1e|G|3315
8HFR|1|1e|U|3317
8HFR|1|1e|G|3318
*
8HFR|1|1e|C|3388
8HFR|1|1e|U|3389
8HFR|1|1e|G|3390
*
8HFR|1|1e|G|3390

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L3

Chain Pv

60S ribosomal protein L17-A

Chain dG

60S ribosomal protein L31-A