J3_8HFR_018
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 8HFR|1|1e|U|117, 8HFR|1|1e|U|118, 8HFR|1|1e|G|120, 8HFR|1|1e|A|121, 8HFR|1|1e|U|147, 8HFR|1|1e|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8HFR|1|1e|C|113
8HFR|1|1e|A|114
8HFR|1|1e|A|115
8HFR|1|1e|A|116
8HFR|1|1e|U|117
8HFR|1|1e|U|118
8HFR|1|1e|U|119
8HFR|1|1e|G|120
8HFR|1|1e|A|121
8HFR|1|1e|A|122
8HFR|1|1e|A|123
8HFR|1|1e|U|124
*
8HFR|1|1e|A|144
8HFR|1|1e|G|145
8HFR|1|1e|U|146
8HFR|1|1e|U|147
8HFR|1|1e|G|148
8HFR|1|1e|U|149
8HFR|1|1e|A|150
8HFR|1|1e|A|151
8HFR|1|1e|U|152
8HFR|1|1e|U|153
8HFR|1|1e|U|154
8HFR|1|1e|G|155
8HFR|1|1e|G|156
8HFR|1|1e|A|157
8HFR|1|1e|G|158
*
8HFR|1|1e|C|263
8HFR|1|1e|G|264
8HFR|1|1e|A|265
8HFR|1|1e|A|266
8HFR|1|1e|G|267
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain 3n
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Hj
- 60S ribosomal protein L8-A
- Chain LL
- 60S ribosomal protein L13-A
- Chain No
- 60S ribosomal protein L15-A
- Chain h1
- 60S ribosomal protein L35-A
- Chain ia
- 60S ribosomal protein L36-A
Coloring options: