J3_8HFR_020
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8HFR|1|1e|U|343, 8HFR|1|1e|A|351, 8HFR|1|3n|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8HFR_020 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0741
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8HFR|1|1e|C|340
8HFR|1|1e|G|341
8HFR|1|1e|A|342
8HFR|1|1e|U|343
8HFR|1|1e|A|344
8HFR|1|1e|G|345
8HFR|1|1e|C|346
8HFR|1|1e|G|347
8HFR|1|1e|A|348
8HFR|1|1e|A|349
8HFR|1|1e|C|350
8HFR|1|1e|A|351
8HFR|1|1e|A|352
8HFR|1|1e|G|353
8HFR|1|1e|U|354
8HFR|1|1e|A|355
8HFR|1|1e|C|356
*
8HFR|1|1e|G|363
8HFR|1|1e|G|364
8HFR|1|1e|A|365
8HFR|1|1e|A|366
8HFR|1|1e|A|367
8HFR|1|1e|G|368
*
8HFR|1|3n|C|21
8HFR|1|3n|U|22
8HFR|1|3n|U|23
8HFR|1|3n|G|24
Current chains
- Chain 1e
- 25S ribosomal RNA
- Chain 3n
- 5.8S ribosomal RNA
Nearby chains
- Chain DO
- 60S ribosomal protein L4-A
- Chain YU
- 60S ribosomal protein L26-A
- Chain jh
- 60S ribosomal protein L37-A
- Chain li
- 60S ribosomal protein L39
- Chain rA
- Nucleolar GTP-binding protein 1
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